July 1 - July 7

CSAMA 2012 Agenda Calendar
 «
 
 
» 
Sun, Jul 1 Mon, Jul 2 Tue, Jul 3 Wed, Jul 4 Thu, Jul 5 Fri, Jul 6 Sat, Jul 7
8:30 AM 
8:30
L01: Introduction to R and Bioconductor (RG)
8:30
L05: Computing with Ranges and Intervals (VJC)
8:30
L09: NGS: Variant Calling, RNA Editing (RG)
8:30
L13: Epigenetics. Part 1 (MR)
8:30
L13: Machine Learning (classification, large-p small n, regularisation) (WH)
 
   
9:00 AM   
 
9:15
L02: Bioconductor for Sequence Analysis (MM)
9:15
L06: Basics of HT Sequencing Technologies and Short Read Aligners (SA)
9:15
L10: Differential Analysis for RNA-Seq (and Related Application). Part 1: the Negative Binomial (SA)Distribution
9:15
L14: Epigenetics. Part 2 (MR)
9:15
L14: Gene set enrichment analysis (RG)
 
   
   
10:00 AM 
10:00
Coffee break
10:00
Coffee break
10:00
Coffee break
10:00
Coffee break
10:00
Coffee break
 
   
 
10:30
L03: Reproducible Workflows with R (VJC)
10:30
L07: Sequences, Reads and Alignments (MM)
10:30
L11: Differential Analysis for RNA-Seq (and Related Application). Part 2: NB-GLM and Application to Alternative Exon Usage (SA)
10:30
L15: Gene and genome annotations - AnnotationDbi, GenomicFeatures (MM)
10:30
L15: Emerging topics (TBA)
 
   
11:00 AM   
 
11:15
L04: What You Still Need to Know about Microarrays (WH)
11:15
L08: t-test and Linear model - General Statistical Concepts (RG)
11:15
L12: Multiple Testing and Independent Filtering (WH)
11:15
L16: Variant Annotation and genetics of expression (VJC)
11:15
L16: Emerging topics (TBA)
 
   
   
12:00 PM 
12:00
Pause (no lunch served)
12:00
Pause (no lunch served)
12:00
Pause (no lunch served)
12:00
Pause (no lunch served)
12:00
Pause (no lunch served)
 
   
   
   
1:00 PM 
1:00
Installation Help Desk (2)
 
   
   
   
2:00 PM 
2:00
Lab1: Two options, for R 'beginners' and 'experts': Tutorial (lecture + practical exercises): Basics of R - data types, control, functions, reading and writing text files and spreadsheet tables XOR Machine Learning
2:00
Lab 3: RNA-Seq differential expression: gene-level. Part 1
2:00
Social Program
2:00
Lab5: RNA-Seq differential expression: exon-level. Part 1
2:00
Lab5: Working with Reads, Alignments, and Variant Calls. Part 1
 
   
   
   
3:00 PM   
 
3:15
Coffe break
3:15
Coffe break
3:15
Coffe break
3:15
Coffe break
 
 
3:30
Lab2: Lab1 part II
3:30
Lab4: RNA-Seq differential expression: gene-level. Part 2
3:30
Lab6: RNA-Seq differential expression: exon-level. Part 2
3:30
Lab6:Working with Reads, Alignments, and Variant Calls. Part 2
 
   
4:00 PM   
   
 
4:40
Wrap up
4:40
Wrap up
4:40
Wrap up
4:40
Wrap up
 
   
5:00 PM
5:00
Installation Help Desk (1)
5:00
Flashlight Session 1
5:00
Flashlight Session 2
5:00
Flashlight Session 3
5:00
Flashlight Session 4
 
 
         
         
6:00 PM
6:00
Meet Together
         
         
         
         
7:00 PM         
         
         
         
8:00 PM         
         
           
           
9:00 PM           
           
           
           
10:00 PM             
             
             
             
11:00 PM             
             
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L01: Introduction to ...
L02: Bioconductor for...
Coffee break
L03: Reproducible Wor...
L04: What You Still N...
Pause (no lunch serve...
Installation Help Des...
Lab1: Two options, fo...
Coffe break
Lab2: Lab1 part II
Wrap up
Flashlight Session 1

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