June 14 - June 20

CSAMA09 Agenda Calendar
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Sun, Jun 14 Mon, Jun 15 Tue, Jun 16 Wed, Jun 17 Thu, Jun 18 Fri, Jun 19 Sat, Jun 20
8:30 AM 
8:30
L1: Introduction to R and Bioconductor (RG)
8:30
L3: Differential expression, linear model, empirical Bayes (RB)
8:30
L5: Bioinformatics tasks in next-generation sequencing: An overview (SA)
8:30
L7a: Biostrings(MM)
8:30
L9a: Overview of classification and clustering (RB)
 
   
9:00 AM   
 
9:15
L7b: Region calling (ChIP-seq) (RG)
9:15
L9b: (Cell phenotype) image analysis with R (WH)
 
   
   
10:00 AM 
10:00
Coffee break
10:00
Coffee break
10:00
Coffee break
10:00
Coffee break
10:00
Coffee break
 
   
 
10:30
L2: Microarray preprocessing and quality assessment (WH)
10:30
L4a: Multiple testing, independent filtering (RB)
10:30
L6: Working with high-throughput sequencing data in R/Bioconductor (MM)
10:30
L8: Gene set enrichment methods (SA)
10:30
L10a: Genotyping with microarrays (RB)
 
   
11:00 AM   
 
11:15
L4b: Gene and genome annotation (MM)
11:15
L10b: Visualization (WH)
 
   
   
12:00 PM 
12:00
Pause (no lunch served)
12:00
Pause (no lunch served)
12:00
Pause (no lunch served)
12:00
Pause (no lunch served)
12:00
Pause (no lunch served)
 
   
   
   
1:00 PM 
1:00
Installation Help Desk
 
   
   
   
2:00 PM 
2:00
Lab1: R/Bioconductor Intro; ALL dataset (Ch.1&2)
2:00
Lab3: Two-color arrays (Ch. 4, Sec. 1-4/5)
2:00
Social Program
2:00
Lab5: Differential expression (Ch. 6&7)
2:00
Lab7: GSEA (Ch. 13)
 
   
   
   
3:00 PM   
 
3:15
Coffe break
3:15
Coffe break
3:15
Coffe break
3:15
Coffe break
 
 
3:30
Lab2: Preprocessing (Ch.3)
3:30
Lab4: Fold changes, background correction, transformation (Ch. 5)
3:30
Lab6: Annotation and metadata (Ch. 8)
3:30
Lab8: Overrepresentation analysis, hypergeometric distribution (Ch. 14)
 
   
4:00 PM   
   
 
4:40
Wrap up
4:40
Wrap up
4:40
Wrap up
 
 
4:45
Array Quality Metrics Demo (AK)
 
5:00 PM 
5:00
Flash1: Sebestyen, Haenzelmann, Morrow
5:00
Flash2: Raffelsberger, Kamieniarz, Mela
5:00
Flash3: Spinelli, Nikulenkov, Arima
 
   
           
           
6:00 PM
6:00
Meet Together
         
         
         
         
7:00 PM         
         
         
         
8:00 PM         
         
           
           
9:00 PM           
           
           
           
10:00 PM             
             
             
             
11:00 PM             
             
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Tomorrow's Events
L1: Introduction to R...
Coffee break
L2: Microarray prepro...
Pause (no lunch serve...
Installation Help Des...
Lab1: R/Bioconductor ...
Coffe break
Lab2: Preprocessing (...
Array Quality Metrics...

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